The BBC has an interesting piece on the W10 litigation.
...her Windows 7 computer had automatically tried to update itself to Windows 10 without her permission. She said the update had made her machine unstable, leaving her unable to use it to run her business. Microsoft said it had dropped its appeal to save on legal costs. Microsoft
has been aggressively pushing the latest version of its widely used
operating system, which is currently available as a free download for
computers running Windows 7 and 8. However, many people have
chosen not to upgrade, because they are running old hardware, have
software that does not run on Windows 10, are concerned over the
software's tracking features, or simply do not want it.
In
February, the company bundled Windows 10 in with its security updates
and made it a "recommended update", which meant it was automatically
downloaded and installed unless blocked by the user. Some people accused the company of trying to "trick" customers into installing the update.
Indeed, W10 in my experience has several negatives:
1. It clobbers existing activations on certain products. I had an expensive Chem Draw system and it wiped out my registration.
2. It wipes out drivers. Several of my systems were disabled.
3. It disables older SW. Again this was the case with even old Microsoft SW.
I have one machine left used on a lab bench for imaging and running W7. I have disabled all updates for fear of the above because Dell says it is not compatible with W10. Microsoft has the arrogance in my opinion that no matter what they do to the users who have paid for the systems they rely upon that they can do whatever!
This should some FTC issue. But then again it is an election year and perhaps they are looking for lobbying jobs.
Tuesday, June 28, 2016
Monday, June 27, 2016
Microsoft, W10, and Litigation
PC World has an interesting piece on Microsoft and W10.
A travel agent in California recently took Microsoft to court over the company’s Windows 10 upgrade tactics, and she won. After an unauthorized Windows 10 upgrade borked her small business PC, Teri Goldstein from Sausalito, California sued Microsoft over the issue, as first reported by The Seattle Times. In the end, the judge sided with Goldstein and Microsoft had to pay $10,000 to compensate her for her troubles. Microsoft told the Times it opted not to appeal the matter in order to avoid further legal expenses.
Good for them!
A travel agent in California recently took Microsoft to court over the company’s Windows 10 upgrade tactics, and she won. After an unauthorized Windows 10 upgrade borked her small business PC, Teri Goldstein from Sausalito, California sued Microsoft over the issue, as first reported by The Seattle Times. In the end, the judge sided with Goldstein and Microsoft had to pay $10,000 to compensate her for her troubles. Microsoft told the Times it opted not to appeal the matter in order to avoid further legal expenses.
Good for them!
Labels:
Microsoft
Another Slant on Brexit
Greg Mankiw has a pictorial presentation of Brexit in the form of food. I think it is spot on. Anyone who had been in London say in the mid 60s would even appreciate the can of beans. I recall how horrible almost everything was. Faulty Towers was the Four Seasons then. I recall staying at a hotel near Buckingham Palace and had lunch with a colleague since it was down the street from Victoria Station. There must have been 20 people bustling around the dining area and we were the only two customers. Never got served!
Went to a local place and cardboard was better! The only reason England went to war with France was for the food! The only place worse was Ireland, my family knew how to take the green out of any vegetable! Boil it for a few hours or more!
Oh yes, one more thought. To France, get rid of those foreigners, return it to the Neanderthals!
Went to a local place and cardboard was better! The only reason England went to war with France was for the food! The only place worse was Ireland, my family knew how to take the green out of any vegetable! Boil it for a few hours or more!
Oh yes, one more thought. To France, get rid of those foreigners, return it to the Neanderthals!
Labels:
Commentary
Sunday, June 26, 2016
The Ignorance of Some Academics
In a recent review of the book Life’s Greatest Secret: The
Race to Crack the Genetic Code by Matthew Cobb, a book I admit I have neither read nor do I
have any intent to waste my time thereupon, there is however a letter to the
editor of the New York Review of Books, NYRB, a generally leftist oriented
opinion publication, which stated some rather revealing opinions.
In the above mentioned letter to the NYRB the author states
regarding the original review[1]:
He notes that developments in mathematical information
theory and cybernetics soon after World War II had a strong influence on the
way biologists began to talk about life and heredity —specifically the idea
that DNA contains a “genetic code” replete with “information.” Much the same
point can be made about psychology and neuroscience: they too were influenced
by these developments in the mathematical theory of information, introducing
this notion into the heart of theories of the mind and the brain. But Orr goes
on to remark:
"In the end, the information sciences provided
biologists with loose but useful metaphors and analogies, a language that
allowed scientists to think and speak in new ways. But the high-powered
mathematics of these fields proved mostly impotent in biology [I would add in
psychology and neuroscience too]. No one, for instance, used Shannon’s
equations to say anything especially interesting about organisms…"
.
This raises a troubling question: If these recent ways
of talking in biology, psychology, and neuroscience are really just loose but
useful metaphors, now deeply ingrained in these sciences, what is the literally
true way of speaking for which they substitute? How can we reformulate these
sciences in such a way that the information metaphors are replaced by sober
statement of fact? And do scientists now agree that the borrowed way of talking
really is just loose metaphor, or have they come to take it for literal truth?
This question seems to me not sufficiently addressed, though very important.
Now the original Reviewer notes[2]:
A second theme concerns the respective roles of theory
(of any sort) versus experiment in biology. In the early 1960s, mathematicians
confidently declared that “it will be interesting to see how much of the final
solution [to the coding problem] will be proposed by mathematicians before the
experimentalists find it.” As Cobb concludes, the “answer. . was simple: not
one single part of it.” The interesting question is why theory failed here.
Part of the answer, as Cobb emphasizes, is related to Crick’s idea of the
frozen accident. The genetic code seems at least partly arbitrary. It
represents a half-decent arrangement arrived at by the imperfect, tinkering
process of evolution by natural selection and, once settled on, it couldn’t be
“improved,” or made somehow more systematic. In such a situation theory is
likely useless.
Let me examine these statement a bit in detail.
First:
Let me reiterate Wiener and Cybernetics. He made basically
the following observations:
1. The world is filled with uncertainty. Things are random,
and we have to acknowledge and accept that.
2. Many organic entities are systems. Namely they have actuators
and effectors. They have cause and effect. They are in effect a system which means
we can model cause and effect, albeit under condition 1 above it may very well
be random.
3. Systems have feedback elements, namely inputs yield
outputs which in turn can effect inputs. That means we have systems whose
dynamics are uncertain systems with dynamic effects.
In simple terms the Cybernetic world is a stochastic dynamic
system. Now what about cells, DNA and their functions? They are stochastic dynamic
systems. Ligands attached to receptors which activate pathways which start DNA
reading via a promoter and conversion which produces RNA and then produce
proteins which then become ligands. Some proteins actually modulate the
pathways and receptors. Thus the dynamics of cells is a stochastic dynamic
system. Almost all studies in cancer pathways revolve about that fact. Cybernetics
from a Wienerian mindset is fully accepted in systems biology. It is the very
heart of systems biology.
The letter writer is thus in error. The Cybernetic model is
hardly a loose model. It is at the very heart of understanding cancer dynamics.
It is necessary. The Reviewer, the Author and the Letter Writer are in gross
error in their understanding and articulation of cybernetics.
Furthermore, as we have shown in repeated malignancies, one
can view cancer as a separate dynamic stochastic organism, growing apart from
the human host. Yet if one accepts such a model, then it is possible using
systems approaches to use systems identification theory to identify the system
and systems control theory to mitigate the threat from this organism. One
misses the point in examining single cells, one must view the amalgam, albeit a
heterogeneous organism genetically.
Second:
Now for Shannon. Frankly his approach is quite limited. I
started teaching Information Theory at MIT more than fifty years ago, and even
earlier with a Wienerian view. Shannon and Information work on communications.
Frankly the very term information is a misnomer, mainly since we do not know
what we mean by information from an epistemological basis so by applying this
terms to data bits was cute and catchy but does it a disservice because people
who fail to have any understanding of it will err in its application. Shannon
was interested in signals sent over a noisy channel where there were limits in
transmission capacity, say bandwidth.
He has two main theorems. The Channel Coding Theorem which
says how fast or at what rate you cane transmits a signal over a channel at a
rate where the channel has a capacity in say bandwidth and an interference in
terms of noise. There frankly is no real "information" here. Secondly
is the Source Coding Theorem which says how much you can compress some signal
with excess stuff, called information. For example, we can compress voice to a
few hundreds of bits, 0 and 1, per second or we can likewise do the same with
video at so many thousand bits per second. The Source and Channel Coding
Theorems of Shannon describe dealing with redundancy and dealing with limited
capacity and noise respectively. That's it folks! It does not tell you about
"information", whatever that means to someone. To Shannon it was
changing a sine wave to a bunch of on and off signals. That's all folks.
So when one sees articles, letters, books like this one shudders
and understands why we have so many poorly educated students. It’s the teachers
stupid!
Now; do biologists use any of these approaches? Think Eric
Lander and the human genome. How do you think he got to match all the broken
pieces of DNA into a genome; mathematics? After all he was a trained engineer
in coding, that Shannon stuff. So he may not have used the two Theorems but he
did employ the ideas resulting therefrom.
Pity we have people who make these statements. But alas this
is all too common.
Saturday, June 25, 2016
Illegal Aliens and England
Just a thought about 1066. That William fellow did not have a passport when he decided to cross the Channel. I wonder if the Brits want them out as well. DNA analysis for everyone I guess.
Labels:
Commentary
A Thought on Brexit
To understand Brexit one must understand Edward I and his progeny. Frankly, they started this process off. We Americans have little understanding of history; ours is but some two hundred and forty years. Edward I brutally attacked and hacked his way through Scotland, Wales and Ireland while having occupation rights on most of what we now know as France. His son, Edward II, was most likely the worst King ever, and that include John I and Richard III. His bumbling started the Hundred Years War, yes folks, it was a hundred plus years. Then Edward III managed to intensify this war, and despite the small period with Henry V, the English hacked and slaughtered their way through the Fourteenth and Fifteenth centuries.
So perhaps the roster, well you get the point. Also for almost all Americans who have never lived in Europe, that includes any diplomat or corporate type since they are just ex-Pats, they have no idea how a few thousand years of history still has a day by day impact. I recall the terror in my Czech partners in visiting the Austrians, and the Austrians dislike of the Italians and the French dislike of everyone, and the fact that everyone dislike Germans. Welcome to Europe.
The final issue is that Democracy has a strange effect. People vote and unless you are listening to the people you can get surprised. Will the French be next?
Then there is Russia. Having spent time there and looking at Russian from a non-Kennan like perspective, namely looking at Russia in a long term historical context, one sees the Russians having a point. Between Napoleon and Hitler they have a concern as to threats on their borders. I also believe that includes China and frankly should include North Korea. Eastern Russia, Vladivostok and environs has at its borders an unstable nuclear enabled state. That may be a balance for China but it is an unstabilizing factor for Russia.
The challenge for the next US President will be to understand these complexities. All the way back to Edward I and even before! One should remember why the Metropolitan of Moscow will not convene with the Bishop of Rome. Think about it.
So perhaps the roster, well you get the point. Also for almost all Americans who have never lived in Europe, that includes any diplomat or corporate type since they are just ex-Pats, they have no idea how a few thousand years of history still has a day by day impact. I recall the terror in my Czech partners in visiting the Austrians, and the Austrians dislike of the Italians and the French dislike of everyone, and the fact that everyone dislike Germans. Welcome to Europe.
The final issue is that Democracy has a strange effect. People vote and unless you are listening to the people you can get surprised. Will the French be next?
Then there is Russia. Having spent time there and looking at Russian from a non-Kennan like perspective, namely looking at Russia in a long term historical context, one sees the Russians having a point. Between Napoleon and Hitler they have a concern as to threats on their borders. I also believe that includes China and frankly should include North Korea. Eastern Russia, Vladivostok and environs has at its borders an unstable nuclear enabled state. That may be a balance for China but it is an unstabilizing factor for Russia.
The challenge for the next US President will be to understand these complexities. All the way back to Edward I and even before! One should remember why the Metropolitan of Moscow will not convene with the Bishop of Rome. Think about it.
Labels:
Commentary
Monday, June 20, 2016
Cakes and Bakes by Keller
At the other end of grandsons is Keller and his baking business; Cakes and Bakes by Keller, try it out!
Go try them out! He has mastered the art of fine eating!
Go try them out! He has mastered the art of fine eating!
Labels:
Commentary
Another Eagle Scout
Terrence IV received his Eagle Scout award Saturday, having spent a total on nine years in the process. Congratulations!
Labels:
Commentary
Tuesday, June 14, 2016
Is AI Helpful or is it Merely the Opinion of Millennials in California
McCarthy defines AI, Artificial Intelligence, thus:
Q. What is artificial intelligence?
A. It is the science and engineering of making
intelligent machines, especially intelligent computer programs. It is related
to the similar task of using computers to understand human intelligence, but AI
does not have to confine itself to methods that are biologically observable.
Q. Yes, but what is intelligence?
A. Intelligence is the computational part of the ability
to achieve goals in the world. Varying kinds and degrees of intelligence occur
in people, many animals and some machines.
Q. Isn't there a solid definition of intelligence that
doesn't depend on relating it to human intelligence?
A. Not yet. The problem is that we cannot yet
characterize in general what kinds of computational procedures we want to call
intelligent. We understand some of the mechanisms of intelligence and not
others.
Now in contrast my definition of AI is as follows:
If A=B
Then C
Else D
End
That’s is, no more no less. But the key question is; what is
A, B, C, D? You see we are dealing with computers and we must use numbers,
namely bits. Therefore, ultimately each is some binary number in a memory
location. They are to reflect some reality. Thus the issue is:
1. Who selects the reality?
2. What measures of the reality are used?
3. What weights on the measures are employed?
4. How does one relate the measure of one's perceived
reality with the actual reality, whatever that is?
One can see from the above that a great deal of human
judgement is used. That is even the case if we "adaptively" change
weights and measures. For example, one can use a first level system, namely one
where the programmer assigns weights and measures. Namely we measure x and we
weight it by y to generate z which we call A. Or we could use an adaptive
system. We all like adaptive systems because they allegedly adapt to reality.
But they are ultimately just the first level system pushed down one level. The
adaptive system adapts its variable but by another selected measure called w.
That is, we look at x and y overs some data space and weight it adaptively by w
to get z which we no call A. This of course can be carried on forever but we
still have some human making some value judgement somewhere. Thus that human
value judgement stays with us forever! It can become immortal.
Consider a case from NEJM a few years ago. The answer was
"rabies". From a Bayesian perspective, its probability of ever occurring
would have been zero, and the diagnosis is not definitive until autopsy with
the identification of Negri bodies in the brain. The question of how does one
develop an algorithm, an AI procedure if you will, to identify something that
would generally have zero probability until after death is problematic.
Obviously there are many A, B, C, D, and they may operate sequentially or in
parallel. Furthermore, they may also adapt, namely the weights that map
diagnostic variables into some binary number may change.
Consider the initial presentation in the NEJM article:
The patient had been well until 4 days before admission,
when aching developed in the left elbow, which improved with ibuprofen. The
next day, right-elbow discomfort occurred, and he had decreased appetite. Two
days before admission, he noted difficulty forming words, mild
light-headedness, and mild recurrent pain in both elbows. An attempt to drink a
glass of water precipitated a gagging sensation. He had difficulty breathing
and could not swallow the water. The choking sensation resolved when he spat out
the water, but it recurred with subsequent attempts. He stopped drinking
liquids and became increasingly anxious. One day before admission, he was
unable to shower because of increased anxiety and noted intermittent decreased
fluency in his speech and pruritus at the nape of his neck. He was concerned
that he was having a stroke, and he drove to the emergency department at a
local hospital.
Now if one were in a region where rabies was pandemic one
would immediately think of rabies. But in Massachusetts where there had not
been a case for 80 or more years that would be the last thought. Thus how would
one "program" this decision.
The added results were as follows:
On examination, the patient appeared anxious, with dry
mucous membranes. The blood pressure was 171/80 mm Hg, the pulse 86 beats per
minute, the temperature 36.4°C, the respiratory rate 16 breaths per minute, and
the oxygen saturation 98% while he was breathing ambient air. Other findings
included ptosis of the right eyelid, mild facial twitching, postural hand
tremors, and dysmetria on finger–nose–finger and heel-to-shin testing, without
truncal ataxia. Deep tendon reflexes were symmetrically hyperactive throughout;
plantar reflexes were flexor. There was mild difficulty with tandem walking.
The patient’s speech was rushed and fluent, except for occasional slurred words
and pauses for word finding; the remainder of the general and neurologic
examination was normal. The hematocrit, platelet count, erythrocyte
sedimentation rate, and levels of hemoglobin, C-reactive protein, and troponin
T were normal, as were tests of renal and liver function
Each result has to be added to some metric and some decision
point.
One of the biggest problems in any AI is the judgements made
when developing the primal metrics. The recent discussion regarding the alleged
Facebook new bias is a prime example. AI is not politically neutral. It can be
and remain as such highly biased by the very means by which selection bias is
made. This is the case even if adaptive learning is utilized because even then
the learning algorithms are also elements of bias perforce of their developers
input.
To quote Drucker, who paraphrased McLuhan;
"Did I hear
you right," asked one of the professors in the audience, "that you
think that printing influenced the courses that the university taught and the
role of university all together." "No sir," said McLuhan,
"it did not influence; printing determined both, indeed printing
determined what henceforth was going to be considered knowledge."
Thus this led to McLuhan's famous phrase that the medium is
the message. Specifically, as we developed a new medium for human
communications, we dramatically altered the nature of the information that was
transferred and the way in which the human perceived what was "truth"
and what was not. The television generation of the 1960's was a clear example
of the impact of television versus film in portraying the war in Vietnam as
compared to the Second World War. The perception of these two events was
determined by the difference of the two media that displayed them to the pubic
masses. Television allowed for a portrayal that molded more closely to the
individual human's impact of the events as compared to films overview of the
groups involvement's. Both media deal with the same senses but they are
different enough to have determined two different outcomes of the wars. This
conclusion is a McLuhanesque conclusion but is consistent with the changes that
McLuhan was recounting in the 1960's in his publications.
But a corollary to McLuhan and the medium, is the use of
putative AI techniques to present to humans certain facts. The AI becomes the
new medium, it is the filter between the facts, whatever they are, and the
perceived reality. For example, if one were to be tracking News on politics,
then perhaps the AI presenter, the new medium if you will, may present you
negative only facts on say Trump and positive only on Clinton. The result is
strong medium reinforcement. We know that is the case in print, we clearly can
see this say in The New York Times, hardly a Trump fan, but we know the sources
and can weight it accordingly. However, if there is some AI engine in the
background, hidden behind some curtain, written and architected by the feelings
of some unknown person or persons, then how do we interpret that.
For example, we are now all told that Silicon Valley is the
hub of the new entrepreneurial gestalt. However, this reality is a reality of
apps, and software manipulations and social networking. In contrast we have a
massive entrepreneurial present in Cambridge, here we have genomic engineering
and lifesaving technology. We seem to weight a new app or social network well
above a new pathway inhibitor or monoclonal antibody. Why? Perhaps because the
social networks are self-reinforcing.
Thus our concern is that when we have humans developing AI
algorithms say for medical diagnosis or news presentation the algorithms are inherently
biased. Again in medical diagnosis, does a machine respond as a human when by
misdiagnosing the patient dies. For the machine it is just another data point.
For the human is can be mind altering.
Machines do not make data mistakes, humans do. Yet machines
do not weight their mistakes in such a drastic fashion as humans do. Also
humans are always inserting their value judgements. The result may then, as
Drucker noted, be perceived as the new truth. Thus if we have some group of Millennials
in California writing algorithms called AI, it really must be understood as
nothing more than complex multi-layer opinion pieces, and pieces which may have
long lives. Do we really want their value judgements telling us what is reality?
One would hardly think so. Thus AI poses a significant danger as nothing more
that propaganda from privileged protagonists.
Reference
Greer et al, Case 1-2013: A 63-Year-Old Man with
Paresthesias and Difficulty Swallowing, NEJM, 2013;368:172-80.
Drucker, Peter F., Adventures of a Bystander, Harper Row
(New York), 1979.
Labels:
Commentary
Monday, June 13, 2016
What is the Value of the SATs?
The Admissions Office of UVA notes:
3. Scores from different exams aren't combined.We don't mix sections from different exams together. So we wouldn't put a math score from the ACT together with a reading/writing score from the SAT. Similarly, we won't mix sections from the old SAT and the new SAT. The College Board directed colleges on this last summer. They said it isn't appropriate to mix old and new because the exams are different.
Thus read that last sentence again. Well then what is the purpose of the SAT. It is to measure just what again? I gathered that some of the senior folks there came from the current Administration. That ought to pan out well, just look at their overall record.
SATs are like any other multiple choice exam. Drill Drill Drill. It is the low end equivalent of say the Chinese National Exams. You could have sequences several genomes, modeled successfully cancer pathway dynamics, or solved a few of Hilbert's challenges, but if you do not conform you are in my experience and in my opinion going to do poorly.
I truly feel sorry for some smart kids. If their profile does not meet the new world order then...but after all the Facebooks need some programmers...
3. Scores from different exams aren't combined.We don't mix sections from different exams together. So we wouldn't put a math score from the ACT together with a reading/writing score from the SAT. Similarly, we won't mix sections from the old SAT and the new SAT. The College Board directed colleges on this last summer. They said it isn't appropriate to mix old and new because the exams are different.
Thus read that last sentence again. Well then what is the purpose of the SAT. It is to measure just what again? I gathered that some of the senior folks there came from the current Administration. That ought to pan out well, just look at their overall record.
SATs are like any other multiple choice exam. Drill Drill Drill. It is the low end equivalent of say the Chinese National Exams. You could have sequences several genomes, modeled successfully cancer pathway dynamics, or solved a few of Hilbert's challenges, but if you do not conform you are in my experience and in my opinion going to do poorly.
I truly feel sorry for some smart kids. If their profile does not meet the new world order then...but after all the Facebooks need some programmers...
Labels:
Academy
Cancer Stem Cells: A Philosophical Look
The recent book by LaPlane on Cancer Stem Cells is a brilliantly well-crafted introduction to the field from is a philosophical perspective. Such an approach is significant since it was Galen who promoted the use of logic, and in fact the full trivium, as an integral part of the practice of medicine. Words do mean something and the term "cancer stem cell", the CSC, has been used by many over the last decade and a half oftentimes for multiple and possibly conflicting purposes.
As LaPlane initially notes the somewhat accepted definition of
a CSC is (p. 2):
"Cancer stem cells are, as their name suggests,
cells that combine two identities; they are both cancer cells and stem
cells."
Thus starts the debate. For one must then ask what is a
cancer cell and what is a stem cell. There is also a somewhat adjunct issue of
the Cancer Cell of Origin. This construct is one that states that the initial
change occurs in some cell. Then the CSC states that there may very well be
another cell which carries on the proliferation. The questions then are: what
are the characteristics of that cell, how can it be identified, how can it be
targeted, and what are the therapeutic strategic that should be pursued? This
is what the author examines.
The author's approach is philosophical in that she is
concerned about definitions and the words that are applied. It is a bit of a
return to the Trivium and even to Boethius. Words have meaning and what do we
really mean by them. Furthermore, the author examines the meanings in terms of
the phenomenological basis of each. As such this is a unique and frankly
brilliant approach to a complex area.
It is not clear is this an exclusive coverage but it logically
appears to be. It does assume that the CSCness is defined and immutable. On p.
4 the author raises the concern:
"Stem cells and CSCs raise philosophical questions
regarding their identity because we still do not know exactly what they
are."
Thus we are beginning to read an analysis of things for which
we have a great deal of uncertainty as to their very nature.
On pp 28-31 the author starts to provide some structure to
the definition of a CSC. She initially uses the definition by Reya from 2001
and she appears to give a definition (p. 29) as follows:
"If a cell is capable of self-renewal (a) and differentiation
(b) then it is a stem cell."
The above describes stemness. Yet there are two other
requirements. One requires that it is a CSC is a tiny amount of the total
cancer growth and that, this is critical, that (p. 30):
"…cancers are initiated and maintained by cancer
stem cells."
Just what and how the terms initiated and maintained are to
be interpreted is yet to be determined. Now this word study albeit being
philosophical is essential. Somehow to study something we must be able to define
it in a universally accepted manner so that phenomenologically it is
consistent. The author keeps driving this critical point.
The author, in summary, thus divides CSC into several
categories. First is:
1. Intrinsic: CSCs are CSCs and that is all. Once a CSC
always a CSC. Once a cell has CSCness it always retains that character, and
thus is intrinsic to the cell.
2. Extrinsic: CSCness may be dependent on where and when the
cell resides. A CSC may become a CSC and then change back to something else
depending on some yet to be defined extrinsic factors.
Then for Intrinsic we have (Chapter 7):
1.1 Categorical: It is in its very essence. It is what it
is.
1.2 Dispositional: It depends on some extrinsic factor. It
has a potentiality but it must be activated by some externality.
and for Extrinsic we have (Chapter 8):
2.1 Systemic: It can be determined from any niche. As the
author states on p. 169:
"…at least two kinds of processes can induce
stemness: stochastic events affecting gene expression and cell population level
regulations. In both cases stemness appears to be regulated at the
population/system level suggesting stemness would be a "systemic
property""
2.2 Relational: This is purportedly analogous to
Dispositional but it is for the extrinsic mode. Namely some extrinsic niche
element.
Thus there are four models of the CSC and each has some
element of plausibility. Frankly perhaps all exist. The author then proceeds to
examine each with both phrenological analyses as well as logical. She further
posits possible therapeutic mechanisms for each. This is exceptionally well
done and understandable.
Overall this is a unique and highly valuable contribution to
the literature as well as to the discussions on the field of CSCs.
Phenomenologically we seem to be obtaining new insights each day and having a
framework to consider them is essential.
There are several areas where the author should have
explored more. Let me name a few.
Mitosis: We know that cells divide by a process of mitosis. Generally,
the cell divides and the resultant two cells are identical to the parent.
Unless of course if some aberrant change occurs in copying the DNA as it
splits. Thus it would be useful to
demonstrate phenomenologically how this process would work so smoothly in CSCs.
How does mitosis occur with a CSC so as to enable this bifurcation into a
duplicate and an aberrant albeit non-CSC cell? What is the phenomenological
steps that allows this? Thus far it appears to be some magical process which is
just skipped over.
Dynamics of CSCs: In the classic CSC model each CSC divides
creating a single copy of itself and a copy of some type of non-CSC cancer
cell. Then somehow this collection of non-CSC cancer cells increases. If they
do not divide, then growth rates are dominated by the CSC. For example, in the
simplistic clonal theory where a single cell mutates and thence this cell just
multiples the resultant populations grows exponentially. This may be modified
by some form of apoptosis or lack of cell progression but it states that it is
just a clonal explosion. We now know however that cancer cells as they go through
he body are highly heterogeneous. Thus cancer is not purely clonal.
Epigenetics: We now understand that epigenetics plays a key
role. However, their cellular dynamics is relatively little understood. Certain
cancers such as MDS are really methylation disorders, that is epigenetic, and
yet they often progress to AML.
Ensemble Models: In physics such as in statistical dynamics and
in engineering in large scale stochastic adaptive control systems one develops
ensemble models. Namely one could consider cancer as ensemble of cell states
with transitions occurring between these states. A cell state would be the
expression state of the genes, namely what genes are functioning and which are
not. This of course is suggestive. Then one could consider a model for a space
time spread of this new organism, the cancer states, and instead of looking for
a CSC one could look to identify the "control elements" of this new
quasi organism. This would be an adaptive system approach based upon a totally
different view of the cancer. Thus is the CSC a transient artifact or a
fundamental target for cancer?
Coverage: Are the epistemological models posited by the
author complete? Do they cover all possible options in which a putative CSC can
take? The four seem to be so: internal with internal control, internal with
external control, external with internal control, and external with external
control. It appears that these cover all options. Yet is it too all encompassing?
Or as an Ockhamist is each CSC just another representation of how cancer can
develop. Is the attempt by the author to categorize to be defeated by nominalism?
Overall this is a superb book and should be read and
consumed by those in the field. The debates still continue but having such an
approach brings new insight and discipline that is of great value.
Labels:
Cancer
Thursday, June 2, 2016
More on Bats
The CDC reports a troubling case of a death from rabies. They state:
Rabies is a nearly universally fatal zoonotic disease, but is preventable if exposed persons receive postexposure prophylaxis (PEP). During recent decades, most domestically acquired human rabies cases in the United States have been associated with bat exposures; however, in the majority of these cases, no bite was reported. In 2015, a Wyoming woman aged 77 years died from infection with a rabies virus variant enzootic to the silver-haired bat. The patient had contact with a bat while sleeping, but she and her husband, her primary caregiver, were unaware of the risk for rabies in the absence of a visible bite wound; they did not seek medical evaluation or receive PEP after the incident. The patient’s family had reportedly contacted several local agencies about bats near their home over multiple years, but had not been informed about the risk for rabies.
Rabies and bats are always paired. Bats are invasive and seek home for their settings. Bats also are as noted the most significant carrier and transmitter of rabies. How any physician missed this is unthinkable. Prophylactic treatment is essential even is a minimal exposure is considered.
The problem is that the vaccine is expensive and often not covered by insurance and further most Health Authorities are not attuned to the risk.
Hopefully the CDC can address this issue. Death from rabies is preventable if only one were to act.
Rabies is a nearly universally fatal zoonotic disease, but is preventable if exposed persons receive postexposure prophylaxis (PEP). During recent decades, most domestically acquired human rabies cases in the United States have been associated with bat exposures; however, in the majority of these cases, no bite was reported. In 2015, a Wyoming woman aged 77 years died from infection with a rabies virus variant enzootic to the silver-haired bat. The patient had contact with a bat while sleeping, but she and her husband, her primary caregiver, were unaware of the risk for rabies in the absence of a visible bite wound; they did not seek medical evaluation or receive PEP after the incident. The patient’s family had reportedly contacted several local agencies about bats near their home over multiple years, but had not been informed about the risk for rabies.
Rabies and bats are always paired. Bats are invasive and seek home for their settings. Bats also are as noted the most significant carrier and transmitter of rabies. How any physician missed this is unthinkable. Prophylactic treatment is essential even is a minimal exposure is considered.
The problem is that the vaccine is expensive and often not covered by insurance and further most Health Authorities are not attuned to the risk.
Hopefully the CDC can address this issue. Death from rabies is preventable if only one were to act.
Labels:
Health Care
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