Tuesday, January 1, 2013

Understanding Cancer Risks

Now in today’s NY Times[1] there is an article by some woman who is concerned about here genes. As the writer states:

I jogged into the Stanford Cancer Clinic with my boyfriend, the youngest people there by two decades. We stood there sweating and holding hands, a jarring sight in the sickly light.

“You are 18, right?” the receptionist asked. Behind me, a woman so gaunt that her cheekbones protruded rolled by in a wheelchair. The oncologist called me alone to the exam room, and I told her the story I had revealed to more doctors than friends: I carry the BRCA1 mutation, which gives you a 98 percent chance of developing cancer.

Somatic versus germline, this is somatic. Namely the presence of this gene mutation in a Bayesian sense yields a high probability of incidence. So what does one do? Remove the offending organs, watch and wait, forget about it? All of these are options, and options that have costs and consequences. Remember the aphorism, “prior planning prevents poor performance”.

Now what can one do when one may be faced with such a dilemma? Let us consider several examples. They may all be primarily somatic and they are all Bayesian. There are two questions; what to do when and why to do what? Let us consider the first question; what to do when?

1. Colon Cancer: Assume there are three family members who have had colon cancer, two first degree, mother and sister, and a second degree, an aunt. What should one do? This tells one almost as much as BRCA status. Clearly if one has this family history one should have frequent colonoscopies. Finding an adenoma early means it is excised before becoming malignant. It reduces the risk of a malignancy.

2. Melanoma: Assume that one has two first degree relatives with melanoma and that you have had four atypical or dysplastic nevi. Now what should one do? Clearly one has a significantly elevated risk of melanoma. Melanoma for the most part is on the surface skin, it can also be in the eye, colon, mouth, or other epithelium. So how best to handle it? Periodic skin examination and excision of lesions as early as possible, seems at present to be the best. Are there any gene tests? Not really, not yet. But one must euphemistically just keep ahead of the bow wave.

3. Prostate Cancer: This gets tricky and political. Assume you have one first degree relative who dies of a highly aggressive form of prostate cancer; PSA of 4-40 in two years and 40-dead in another two. You have annual PSA tests, best we can do, excluding PCA3, and you find a velocity of 0.8 pa. Namely there is a sudden spike. What to do? Here is where its gets political. Akin to the BRCA issue, kind of, you get a prostate biopsy. It is negative. Does that tell you something? Yes but not all, a second one in 912 months is essential, especially if PSA still rising. What you see is a complex process, with risks, costs, and uncertain outcomes.

4. BRCA Breast Cancer Presence: Now look at the case in the paper. You have relatives with BRCA mutation positive and you wonder what to do. Now that depends. In this case your test if also showing a mutation means you have a very elevated risk of breast and ovarian cancer. Do you get a mastectomy and the ovaries removed? It is costly and yet the risk if substantial. It is disfiguring and possibly even more. Is the cost worth it, is the discomfort, physical and mental worth it, possibly. It is a personal decision. For society is it worth it, yes, having a productive member may very well be more important than having a deceased one.

Now the author continues:

So was I wrong to unwind my double helix?

My risks of getting cancer at 21 are too low for me to do anything differently to better my odds. The knowledge is both irrelevant and painful; it’s obsessed me and made me behave irrationally. I wake from nightmares in which I am dying from cancer. I reread the memoirs of patients with metastatic disease until I can’t see the text through my tears. In my supposedly rational pursuit of knowledge, I’ve gone a little mad.



Despite an excess of information, I pursued more, enrolling in Stanford’s cancer biology class. The professor filled his slides with dark oncological puns, lecturing with the almost robotic detachment I sometimes see in those who work closely with cancer. Maybe I, too, am becoming robotic. I can laugh at the puns, calmly press lecturers on survival rates for breast cancer, marvel at the elegant molecular mechanisms by which it eats us alive. Just as tumors eventually swell too large for their hosts to endure, will all this knowledge grow past what I can handle?

Now let us consider the second question, why to do what? This is the tough question. This is the self-searching, soul searching, process. Each person in a way answers it differently. I have seen the following types of people:

1. Pragmatics: These people just do not want to leave a mess around, and they believe that if they get ill they create a mess for themselves and others and then why not just take preventive measures now and get the risk reduced if possible. The go for colonoscopies, skin exams, and yes eve gene testing, if the result has a positive mitigating factor. If the gene test, however, shows a deadly disease potential for which there is no cure, then let fate take its toll. On a cost benefit analysis basis these are not the cheapest overall for society, but are cheap.

2. Hypochondriacs: Yes they exists, they want every test no matter how costly and how ineffective. On a cost benefit basis, this cost a fortune.

3. Deniers: These people would not get tested for any reason until the end is near. The old man who has not had a bowel movement for eight weeks, has lost 20% body weight and has sever back pain. They he finally is dragged in and we see metastasized pancreatic cancer, and he has a best a week to live. On the cost basis, they are the lowest. In this case they go from diagnosis to a hospice for a very short while.

4. The Terrified: This is a mix between the hypochondriac and the denier. They have a real basis for concern, yet they do not outright deny it. They vacillate between considering and effecting preventive care and then falling back into nothing for fear of the result.
These four groups are just a few of the generalizations that one sees. But one of the most important questions that a physician can ask themselves is what type of patient am I seeing, how will they react, what motivates them to do the right thing, assuming we know what that even is. Thus how does a physician motivate a smoker to stop, a diabetic, Type 2, to shed weight, and a drug abuser to quit? What of the mammogram for a woman, do we harass her to have one? Evan if there is no family history. All too often we have the one test fits all, yet with genomic tests we do have much better tools. How will a patient react?

In ten years of less, along with the CBC, done by a simple machine, we will have a full gene profile of somatic genes. What do we do with it? Knowledge will change each year as we understand more and more. Yet the full gene profile may not change. What does the patient want to know, need to know, and what does the patient not really have to know? These will be the driving questions.

But in a way this article is akin to the first and second year Med students, who often come down with diseases they are studying, at least a few come down with certainty with Dengue Fever, despite the fact that they never left Massachusetts. Then it slowly disappears. The more one knows the more one understands the disease and the person often separate, but always in the same package.