Wednesday, May 9, 2018

Liquid Biopsies and Cancer



Cancer has for years been diagnosed via a biopsy of the focal lesion tissues. Prostate cancer was diagnosed based upon biopsies of the prostate, often from samples taken in the "dark", namely needle biopsies guided by ultrasound, but little else. Melanoma was diagnosed by a skin biopsy, examining a lesion seen visually and then examined histologically. Some lesions are examined via immunological tests or other such tests. In general, this is done on an inspection of specific tissues.

It is also known that primary as well as metastatic lesions slough off cells, proteins, RNA or DNA, or exosomes of various types which end up in the blood stream. Primary lesions also use the blood stream as a means to metastasize, as well as the lymphatic system. Thus there has been an interest in using what is in the blood stream to see if there is a cancerous growth, to be used as a prognostic tool, and even to be used as a means to develop some form of precision therapeutic.

The advantage of sampling the blood is that it is readily accessible. The disadvantages are multiple:

1. We really have no idea where the cells or components have come from. Are they primary or a met, are they from a truly virulent cancer or just an incidental finding?

2. We always face the problem of a cancer stem cell or cell of origin. Thus what we analyze may be a progeny which is not the driving factor in the development of the cancer.

3. The "tool" problem is always there. Namely, do we have tool adequate to ascertain a single cell or cell component to achieve the desired specificity and sensitivity?

Many of these hurdles are being overcome and the examination of a individual based on sampling of the blood is now within reach. This is essentially the field of "liquid biopsy".


Some of the earliest work on cancer cell shedding was done in the early 1970s and reported by Butler and Gullino who noted:

The rate of tumor cell shedding into efferent tumor blood was measured in growing and regressing MTW9 rat mammary carcinomas. The hormone-dependent tumor, grown as an isolated preparation, permitted collection of all of the efferent blood. Regression was induced by reduction of mammotropin level in the host. Tumor cells were differentiated from normal leukocytes by indirect immunofluorescence. Growing tumors shed 3.2 x 106 and regressing tumors shed 4. 1 x 106 cells per 24 hr per g tissue.

Cell shedding rates of  growing versus regressing tumors were not significantly different over a tumor size range of 2 to 4 g. The number of tumor cells in the arterial blood was 12-fold smaller than in the efferent tumor blood. It is concluded that: (a) cell shedding via blood probably plays only a minor role in the total cell loss by growing MTW9 carcinomas; (b) hormone-induced tumor regression does not depend on increased cell shedding; (c) tumor cells are rapidly cleared from circulating blood; and (d) a 2-g MTW9 carcinoma pours enough cells into the host circulation to transplant the tumor every 24 hr.


Thus there is a continual shedding of tumor cells and the above result has been verified many times over the past decades. But again, this shedding is from anywhere the tumor may have resided, and in its journey in the blood stream we would find it difficult to determine that. However we have argued elsewhere that it may very well be possible to determine the location of the cell by its surface markers which often are descriptive of from whence it came[2].

As noted in the NCI site[3], the current working definition of "liquid biopsy" is as follows:

A test done on a sample of blood to look for cancer cells from a tumor that are circulating in the blood or for pieces of DNA from tumor cells that are in the blood. A liquid biopsy may be used to help find cancer at an early stage. It may also be used to help plan treatment or to find out how well treatment is working or if cancer has come back. Being able to take multiple samples of blood over time may also help doctors understand what kind of molecular changes are taking place in a tumor.

In a recent paper by Harris et al (2018) the authors note:

Cancer stem-like cells (CSCs) are associated with cancer progression, metastasis, and recurrence. CSCs may also represent a subset of tumor-initiating cells, tumor progenitor cells, disseminated tumor cells, or circulating tumor cells (CTCs); however, which of these aggressive cell populations are also CSCs remains to be determined. In a prior study, CTCs in advanced prostate cancer patients were found to express CD117/c-kit in a liquid biopsy.

Whether CD117 expression played an active or passive role in the aggressiveness and migration of these CTCs remained an open question. In this study, we use LNCaP-C4-2 human prostate cancer cells, which contain a CD117+ subpopulation, to determine how CD117 expression and activation by its ligand stem cell factor (SCF, kit ligand, steel factor) alter prostate cancer aggressiveness. CD117+ cells displayed increased proliferation and migration.

Further, the CD117+ cells represented a CSC population based on stemness marker gene expression and serial tumor initiation studies. SCF activation of CD117 stimulated increased proliferation and invasiveness, while CD117 inhibition by tyrosine kinase inhibitors (TKIs) decreased progression in a context-dependent manner. We demonstrate that CD117 expression and activation drives prostate cancer aggressiveness through the CSC phenotype and TKI resistance.

This article highlights several interesting areas and their convergence.

First, the reassessment of the cancer stem cell especially as applied to PCa.

Second, the use of CTCs to assess the progress of a disease and thus establish a reliable prognostic marker.

Third, the identification of CD117 as a specific marker for an aggressive form of PCa.

The authors provide an interesting platform for this convergence but it also allows for a window on all three of these areas. CTCs are receiving more attention. We know that cancer cells leave local sites, travel through the blood to distant sites. Likewise these distant sites also slough off cells or parts of cells. We have previously examined this for oncosomes in prostate cancer a while back[4].

Thus we may ask; why a liquid biopsy at all? Zhe et al give a fundamental answer:

Despite major advances in research and therapy, cancer continues to be the second cause of death in the United States, with 1 in 4 deaths due to cancer. Primary tumors rarely have deadly consequences, while metastatic disease accounts for around 90% of the mortality due to solid tumors. Therefore, the development of new sensitive methods that allow the detection of cancer dissemination, most notably in the common carcinomas, before full blown clinically detectable gross metastatic deposits are established is of tremendous utility to help physicians in treatment decisions.

Basically a liquid biopsy presages metastatic growth. Localized tumors, often termed "carcinoma in situ" are just that, local. The cells may have begun to proliferate but they do so locally and have not begun to wander into the blood or lymph system.


Liquid biopsies come in many different forms. We outline them in the figure below and then provide a brief discussion (see Abraham et al).

1. CTCs Circulating Tumor Cells: CTCs represent intact, viable non-hematological cells with malignant features that can be isolated from blood

2. ctDNA Circulating tumor DNA: Circulating cell-free DNA (cfDNA) are small DNA fragments found circulating in plasma or serum, as well as other bodily fluids.

3. cfRNA Circulating Free RNA: Tumor cells actively release several species of cfRNAs, into the blood including non-coding RNAs

4. Exosomes: High levels of exosomes are found in several bodily fluids from cancer patients

Domínguez-Vigil et al present a recent update as to what can be the basis for detection of cancers via hematological sampling. They note:

Circulating tumor DNA (ctDNA): DNA is continuously released in fragments into the circulation through processes such as apoptosis and necrosis by both normal and cancerous cells. When released irrespective of cell of origin, it is typically referred to as cfDNA (cell-free DNA); but when released specifically by cancer cells, it is mostly referred to as ctDNA (circulating tumor DNA). Among the molecular characteristics of ctDNA are that it may harbor mutations, CNVs, methylation changes, or integrated viral sequences associated with the tumor

Circulating tumor cells (CTCs): CTCs have been discovered for Asworth in 1869 during an autopsy of a patient who had metastatic cancer. They are cancer cells that detach from a primary or metastatic tumor site and are present in the circulation. Clinical evidence indicates that patients with metastases have 1–10 CTCs per mL of blood and they are rarely found in clinically healthy people or in people with nonmalignant tumors. CTCs have been detected in different types of cancers, such as breast, ovarian, prostate, lung, colorectal, hepatocellular, pancreatic, head and neck, bladder, and melanoma

Exosomes: Exosomes are small round vesicles, 30–120 nm in diameter, and of endosomal origin carrying RNA, miRNAs, DNA, and proteins that are released by multiple cell types (including tumor cells) into the extracellular environment. Exosomes may mediate some form of communication between cells, being internalized by other cells

miRNAs: MicroRNAs or miRNAs are small molecules of non-coding RNA, between 19 and 24 nucleotides in length, that act as regulatory molecules of gene expression, exerting function by hybridizing to inhibit the translation of mRNAs of its target genes. Differential expression of miRNAs in patients with cancer has been described.


The area of "liquid biopsies" is an active and exciting area of research. However it still presents a multiplicity of challenges. We briefly discuss some these here.


This is an interesting and strongly visual result. However, there are several observations:

Mutations: Cancer cells are continually mutating. Mutations results oftentimes in new surface receptors due to the changes in the internal proteins. The cell surface receptors may respond differently to the passage through such a cellular membrane. Thus this model may be reflective of itself but not of reality.  

Localization: One of the most intriguing things about cancers is the localization of the metastases. Why, for example, do we so often see prostate cancer go to the bone, melanoma to the brain, across the blood brain barrier, and the same with so many other cancers. There is a predisposition to transfer at specific sites. How does this approach deal with such localization effects?

Stem Cells: Stem cells are a potential significant factor in understanding metastasis. One question is; do stem cells move as easily as others or more so? Or, are stem cells just active wherever they are and their products are carried through the blood stream to sites where they can continue cellular proliferation, and possibly induce a new set of stem cells there?

In and Out Flows: One of the questions one must ask when looking at cancer cells in the blood, as has been done recently, is if the cell is coming or going? Namely is the cell going from a source site, a primary, to a remote or metastatic site, or from an already metastatic site to another new one? The tagging of such cells would be important. The understanding of the genetic changes would also be of critical importance.

Biochemical Drivers: The nature of cell surface markers, receptors and the like, often dominate how the cells behaves, interacts with the ECM, and can move to the blood system and exit from it as well. We have argued that the cancer cell just flows and diffuses in the blood system and that there is no growth. That is just gross speculation but it is open to debate. Moreover the interaction of the cell with the cell way, and the localization effects of the cell way by organ specificity may be an attractive basis for organ specific metastasis. Or possibly not. But, having all these elements at play in vivo is better than in vitro.

Immune System: Then also is the impact of the immune system as the cells flow through the vessels. The cells are in a massive amount of immune system interactions, and how does this impact the cells?

These are but a few of the unanswered questions elicited by this paper. The simulation is well worth looking at the paper, but taking its results as fact is stretching it a bit too far.


It would appear that a great deal of progress has been made yet there are still many significant challenges. As Kaiser has recently noted:

A team of researchers has taken a major step toward one of the hottest goals in cancer research: a blood test that can detect tumors early. Their new test, which examines cancer-related DNA and proteins in the blood, yielded a positive result about 70% of the time across eight common cancer types in more than 1000 patients whose tumors had not yet spread—among the best performances yet for a universal cancer blood test. It also narrowed down the form of cancer, which previously published pan-cancer blood tests have not. The work, reported online today in Science, could one day lead to a tool for routinely screening people and catching tumors before they cause symptoms, when chances are best for a cure. Other groups, among them startups with more than $1 billion in funding, are already pursuing that prospect.

The new result could put the team, led by Nickolas Papadopoulos, Bert Vogelstein, and others at Johns Hopkins University in Baltimore, Maryland, among the front-runners. “The clever part is to couple DNA with proteins,” says cancer researcher Alberto Bardelli of the University of Turin in Italy, who was not involved in the work. The researchers have already begun a large study to see whether the test can pick up tumors in seemingly cancer-free women.

Yet there are reservations. Kaiser concludes:

For those who test positive twice, the next step will be imaging to find the tumor. But that will bring up questions raised by other screening tests.

Will the test pick up small tumors that would never grow large enough to cause problems yet will be treated anyway, at unnecessary cost, risk, and anxiety to the patient?

Papadopoulos thinks the problem is manageable because an expert team will assess each case. “The issue is not overdiagnosis, but overtreatment,” he says. Still, others working on liquid biopsies say that it will take time to figure out whether widespread screening of healthy people with a universal blood test can reduce cancer deaths without doing harm. “If people expect to suddenly catch all cancers, they’ll be disappointed,” says cancer researcher Nitzan Rosenfeld of the University of Cambridge in the United Kingdom. “This is exciting progress,” he says. “But evaluating it in the real world will be a long process.”

Namely Kaiser does reflect the reality of assuming that liquid biopsies are a pending reality. As we have noted, there may be a chance for prognostic use in already metastatic disease. Will liquid biopsies identify indolent cancers, will its use result in putative diagnoses that result in costly tests and procedures but to no avail.

Overall as a physician, one would like to know what lesion is where and how large and how aggressive. Then using the therapeutic tool box one could possibly treat the lesion.


As noted above there is considerable interest in "liquid biopsy" approaches but yet there are reservations as well.  As Fouad and Aanei have noted:

Once in circulation, circulating tumor cells (CTCs) are exposed to harsh selective conditions and must devise adaptive techniques. Examples include platelet coats shielding from shear forces and immune-clearance, and metabolic rewiring blunting oxidant stress. Serving as a “liquid biopsy”, isolated CTCs could provide means for cancer screening, estimation of metastatic relapse risk, identification of targetable components, exploring tumor heterogeneity, and monitoring therapeutic response. Multiple challenges still stand in the way and will need to be addressed before clinical utilization.

CTCs can be a powerful marker. Yet they leave many questions unanswered.


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